Neurosim Lab   @  Downstate/KCHC

Conference presentations

Posters presented at conferences are available below. Slides from conference talks are also available, upon request; please visit our People page and contact the speaker directly.

2016

Dura-Bernal S, Suter BA, Neymotin SA, Shepherd GMG, Lytton WW. (2016) Modeling the subcellular distribution of synaptic connections in cortical microcircuits. Society for Neuroscience (SFN'16)

McDougal RA, Tropper C, Hines ML, Lytton WW. (2016) Expanding NEURON support for reaction-diffusion models. Society for Neuroscience (SFN'16)

Neymotin SA, Dura-Bernal S, Suter BA, Lakatos P, Shepherd GMG, Lytton WW. (2016) Beta oscillations in neocortex: a multiscale modeling study. Society for Neuroscience (SFN'16)

Sherif M, Neymotin S, Lytton W. (2016) Schizophrenia genome-wide association studied with computer simulation: gamma oscillations and information flow in CA3. Society for Neuroscience (SFN'16)

Dura-Bernal S, Suter BA, Neymotin SA, Kerr CC, Quintana A, Gleeson P, Shepherd GMG, Lytton WW. (2016) NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks. Collaborative Development of Data-Driven Models of Neural Systems, HHMI Janelia.

Neymotin SA, Dura-Bernal S, Seidenstein A, Lakatos P, Sanger TD, Lytton WW. (2016) Multiscale modeling of M1 multitarget pharmacotherapy for dystonia. Collaborative Development of Data-Driven Models of Neural Systems, HHMI Janelia.

Dura-Bernal S, Suter BA, Neymotin SA, Kerr CC, Quintana A, Gleeson P, Shepherd GMG, Lytton WW. (2016) NetPyNE: a Python package for NEURON to facilitate development and parallel simulation of biological neuronal networks. Computational Neuroscience (CNS'16). PDF

Dura-Bernal S, Menzies RS, McLauchlan C, van Albada SJ, Kedziora DJ, Neymotin SA, Lytton WW, Kerr CC. (2016) Effect of network size on computational capacity. Computational Neuroscience (CNS'16).

Gleeson P, Marin B, Sadeh S, Quintana A, Cantarelli M, Dura-Bernal S, Lytton WW. (2016) Davison A, Silver RA A set of curated cortical models at multiple scales on Open Source Brain. Computational Neuroscience (CNS'16).

Neymotin SA, Dura-Bernal S, Seidenstein A, Lakatos P, Sanger TD, Lytton WW. (2016) Multiscale modeling of M1 multitarget pharmacotherapy for dystonia. Computational Neuroscience (CNS'16).

Seidenstein AH, Neymotin SA, Barone FC, McDougal RA, Lytton WW. (2016). Mosaic method of multiscale modeling for ischemic stroke. Computational Surgery (Cosine 16).

2015

Dura-Bernal S, Suter BA, Neymotin SA, Quintana AJ, Gleeson P, Shepherd GMG, Lytton WW. (2015) Normalized cortical depth (NCD) as a primary coordinate system for cell connectivity in cortex: experiment and model. Society for Neuroscience (SFN'15)..

McDougal RA, Bulanova AS, Hines ML, Lytton WW. (2015) Hybrid 1d/3d reaction-diffusion in the NEURON simulator. Society for Neuroscience (SFN'15).

Neymotin SA, Suter BA, Migliore M, Dura-Bernal S, Shepherd GMG, Lytton WW. (2015) Optimizing computer models of layer 5 motor cortex pyramidal neurons using somatic whole-cell recordings. Society for Neuroscience (SFN'15). PDF

Seidenstein AH, Neymotin SA, Hines ML, McDougal RA, Bulanova AS, Lytton WW. (2015) Neuronal network bump attractors augmented by calcium up-regulation of Ih in a multiscale computer model of prefrontal cortex. Society for Neuroscience (SFN'15).

Sherif M, Skosnik P, Hajos M, Lytton W. (2015) Computer modeling of the role of endocannabinoids in CA3 network dynamics. Society for Neuroscience (SFN'15).

Tropper C, Zhongwei L, McDougal RA, Hines M, Lytton W. (2015) Parallel reaction-diffusion simulation in NEURON. Society for Neuroscience (SFN'15).

McDougal RA, Neymotin SA, Morse TM, Hines ML, Lytton WW, Shepherd GM. (2015) Developing models with NEURON and ModelDB. Modeling and Computation of Transmembrane Transport Workshop, Mathematical Biosciences Institute

McDougal RA, Hines ML, Lytton WW. (2015) Coupling 1D and 3D domains in neuroscience simulations. Multiscale Modeling. National Institutes of Health

Neymotin SA, Dura-Bernal S, Suter BA, Migliore M, Shepherd GMG, Lytton WW. (2015) Microconnectomics of primary motor cortex: a multiscale computer model. Multiscale Modeling. National Institutes of Health PDF

Choi JS, Menzies RJ, Dura-Bernal S, Francis JT, Lytton WW, Kerr CC. (2015) Spiking network modeling of neuronal dynamics in individual rats. Computational Neuroscience (CNS'15).

Dura-Bernal S, Kerr CC, Neymotin SA,Suter BA, Shepherd GMG, Francis JT, Lytton WW. (2015) Large-scale M1 microcircuit model with plastic input connections from biological PMd neurons used for prosthetic arm control. Computational Neuroscience (CNS'15).

Neymotin SA, Suter BA, Migliore M, Dura-Bernal S, Shepherd GMG, Lytton WW. (2015) Motor cortex neurons: from experiment to model via evolutionary algorithms. Computational Neuroscience (CNS'15). PDF

Seidenstein AH, McDougal RA, Hines ML, Fesharaki A, Lytton WW. (2015). Parallelizing large networks using NEURON-Python. Computational Neuroscience (CNS'15).

Dura-Bernal S, Majumdar A, Neymotin SA, Sivagnanam S, Francis JT, Lytton WW. (Dec 2015) A dynamic data-driven approach to closed-loop neuroprosthetics based on multiscale biomimetic brain models. IEEE Conference on High Performance Computing 2015 Workshop: Dynamic Data Driven Applications Systems (DDDAS) for Smarter Systems.

Lytton WW and von Drongelen W (Jul 2015). Beyond the canon: temporal and spatial multiscale organization in cortex Computational Neuroscience Meeting Workshop.

Erdemir A, Mulugeta L,Lytton WW (May 2015). Ten "not so simple" rules for credible practice of modeling & simulation in healthcare Frontiers in Medical Devices Meeting.

2014

Dura-Bernal S, Li K, Brockmeier A, Kerr CC, Neymotin SA, Principe J, Francis JT, Lytton WW (Nov 2014). Repairing lesions via microstimulation in a spiking network model driving a virtual arm. Society for Neuroscience.

Lakatos P, Barczak A, Neymotin S, Lytton W, McGinnis T, Javitt D, O'Connell N (Nov 2014). Thalamocortical dynamics of rhythmic selective and tonic suppressive modes in the auditory system. Society for Neuroscience.

Neymotin SA, McDougal RA, Hines ML, Lytton WW (Nov 2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex. Society for Neuroscience.

McDougal RA, Hines ML, Lytton WW (July 2014). A method for multi-simulator reaction-diffusion with NEURON Computational Neuroscience.PDF

Bulanova A, McDougal RA, Neymotin S, Mutai V, Lytton WW, Hines M (July 2014). Integrating Systems Biology Markup Language (SBML) with NEURON. Computational Neuroscience.PDF

Dura-Bernal S, Li K, Brockmeier A, Kerr CC, Neymotin SA, Principe J, Francis JT, Lytton WW (July 2014). Modulation of virtual arm trajectories via microstimulation in a spiking model of sensorimotor cortex. Computational Neuroscience.

Kerr CC, O'Shea DJ, Goo W, Dura-Bernal S, Francis JT, Diester I, Kalanithi P, Deisseroth K, Shenoy K, Lytton WW (July 2014). Network-level effects of optogenetic stimulation in a computer model of macaque primary motor cortex. Computational Neuroscience.

Neymotin SA, McDougal RA, Hines ML, Lytton WW (July 2014). Calcium regulation of HCN supports persistent activity associated with working memory: a multiscale model of prefrontal cortex. Computational Neuroscience. PDF

Kerr CC, Pachitariu M, Iordanou J, Francis JT, Sahani M, Lytton WW (2014). Low-dimensional dynamics of somatosensory cortex: experiment and simulation. Computational and Systems Neuroscience.

Dura-Bernal S, Prins N, Neymotin S, Prasad A, Sanchez J, Francis JT, Lytton WW. (April 2014). Evaluating Hebbian reinforcement learning BMI using an in silico brain model and a virtual musculoskeletal arm. Neural Control of Movement.

Francis JT, Iordanou J, Kerr CC, Lytton WW, von Kraus L (April 2014). Erasing sensorimotor memories II: The role of PKMzeta dependent LTP in S1 receptive fields and behavior in the experimentally naive rat and primate. Neural Control of Movement

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Kerr CC, O'Shea DJ, Goo W, Dura-Bernal S, Francis JT, Diester I, Kalanithi P, Deisseroth K, Shenoy K, Lytton WW (April 2014). Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment. Neural Control of Movement.

2013

Dura-Bernal S, Zhou X, Chadderdon GL, Przekwas A, Lytton WW (2013). Interfacing a biomimetic model of sensorimotor cortex with a musculoskeletal model and a robotic arm. San Diego, Nov 9-13, Society for Neuroscience.

Hines ML, McDougal RA, Neymotin SA, Tropper C, Lytton WW (2013). Interfaces in multiscale reaction-diffusion models in the NEURON simulator. San Diego, Nov 9-13, Society for Neuroscience.

Kerr CC, von Kraus L, Iordanou J, Neymotin SA, Francis J, Lytton WW (2013). Receptive field formation and erasure in somatosensory cortex. San Diego, Nov 9-13, Society for Neuroscience.

Mohan A, Chadderdon GL, Suter BA, Shepherd GMG, Lytton WW (2013). Network-level coincidence detection in a computer simulation of primary motor cortex. San Diego, Nov 9-13, Society for Neuroscience.

Neymotin SA, Lytton WW, O'Connell M, Lakatos P (2013). Dynamical microstates in primary auditory cortex. San Diego, Nov 9-13, Society for Neuroscience.

Sherif MA, McDougal R, Neymotin S, Hines M, Lytton WW (2013). Calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. San Diego, Nov 9-13, Society for Neuroscience.

Kerr CC, van Albada SJ, Neymotin SA, Chadderdon G, Robinson PA, Lytton WW (2013). Multiscale modeling of cortical information flow in Parkinson's disease. Computational Neuroscience (talk).

Kerr CC, van Albada SJ, Neymotin SA, Chadderdon G, Robinson PA, Lytton WW (2013). How Parkinson's disease affects cortical information flow: a multiscale model. NeuroEng: Australian Workshop on Computational Neuroscience (talk).

2012

Kerr CC, van Albada SJ, Neymotin SA, Chadderdon G, Robinson PA, Lytton WW (2012). Wrong on so many levels: Parkinsonism in a multiscale network/field model. BrainModes (talk).

Neymotin SA, Chadderdon G, Kerr CC, Francis JT, Lytton WW (2012). Reinforcement learning of 2-joint virtual arm reaching in computer model of sensory and motor cortex. Society for Neuroscience.

Chadderdon G, Neymotin SA, Kerr CC, Francis JT, Lytton WW (2012). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex. Society for Neuroscience. PDF

Kerr CC, van Albada SJ, Neymotin SA, Chadderdon G, Robinson PA, Lytton WW (2012). Effects of basal ganglia on cortical computation: a hybrid network/neural field model. Society for Neuroscience. PDF

Neymotin SA, Chadderdon G, Kerr CC, Francis JT, Lytton WW (2012). Reinforcement learning of 2-joint virtual arm reaching in motor cortex simulation. Computational Neuroscience.

Chadderdon GL, Neymotin SA, Kerr CC, Francis JT, Lytton WW (2012). Dopamine-based reinforcement learning of virtual arm reaching task in a spiking model of motor cortex. International Conference on Cognitive and Neural Systems 16. PDF

Sherif MA, Barry JM, Neymotin SA, Lytton WW (2012). CPP alters hippocampal CA1 oscillations in rat: simulation and experiment. Computational Neuroscience. PDF

McDougal R, Hines M, Lytton WW (2012). Reaction-diffusion modeling in the NEURON simulator. Computational Neuroscience. PDF

Lytton WW, Neymotin SA, Chadderdon GL, Kerr CC, Francis JT (2012). Reinforcement learning of 2-joint virtual arm reaching in detailed cortex simulation. Neural Control of Movement. PDF

2011

Kerr CC, Neymotin SA, Mo J, Schroeder CE, Ding M, Lytton WW (2011). Interlaminar feedback connections dominate in macaque inferotemporal cortex: in vivo and in silico studies. Society for Neuroscience. PDF

Kerr CC, Neymotin SA, Song W, Francis JT, Lytton WW (2011). Modulation of stimulus fields in a computer model of the thalamocortical system. Society for Neuroscience. PDF

Neymotin SA, Kerr CC, Chadderdon G, Francis JT, Lytton WW (2011). Restoring physiological oscillations using neuroprosthetic spike-timing-dependent plasticity in computer model of neocortex. Society for Neuroscience. PDF

Neymotin SA, Kerr CC, Fietkiewicz CT, Chadderdon GL, Lytton WW (2011). Spike-timing-dependent plasticity and subcortical waves enhance alpha oscillations in a computer model of neocortex. Neuroinformatics. PDF

Kerr CC, Mo J, Neymotin SA, Ding M, Lytton WW (2011). Interlaminar Granger causality and alpha oscillations in a model of macaque cortex. Computational Neuroscience. PDF

Neymotin SA, Wester JC, Contreras D, Lytton WW (2011). Simulating the spread of activation in neocortical circuits. Computational Neuroscience. PDF

2010

Kerr CC, Fietkiewicz C, Chadderdon G, Neymotin SA, Lytton WW (2010). Development of In Silico Brain for DARPA REPAIR project. DARPA Neural Engineering, Science, and Technology Meeting. PDF

Neymotin SA, Lee H, Park EH, Fenton AA, Lytton WW (2010). Altered information transfer in neuronal networks marks pathology. Computational Neuroscience.

Neymotin SA, Kao HY, Park EH, Lee H, Fenton AA, Lytton WW (2010). Recurrence of correlation structure in hippocampal neuronal ensembles during spatial behavior. Society for Neuroscience.

Neymotin SA, Lee H, Park EH, Fenton AA, Lytton WW (2010). Emergent oscillations in neocortex: a simulation study. Dynamical Neuroscience XVIII: The Resting Brain: Not at Rest! Satellite meeting for Society for Neuroscience Meeting. PDF

Neymotin SA, Lee H, Fenton AA, Lytton WW (2010). Interictal EEG discoordination in a rat seizure model. Statistical Analysis of Neuronal Data. PDF

2009

Park EH, Neymotin SA, Lytton WW, Fenton AA (2009). Neural discoordination of hippocampus and prefrontal cortex spike trains in a phencyclidine schizophrenia-related animal model. Society for Neuroscience.

Neymotin SA, Jacobs KM, Park EH, Fenton AA, Lytton WW (2009). Information transmission vs processing in computer models of neocortical columns. Society for Neuroscience.

2008

Lytton WW, Neymotin SA, Lee HK, Uhlrich DJ, Fenton AA (2008). Circuit changes augment disinhibited shock responses in computer models of neocortex. American Epilepsy Society. PDF

Fenton AA, Lee H, Kao HY, Neymotin S, Dvorak D, Donnett J, Scharfman H, Lytton WW (2008). Epilepsy and features of psychosis in a rat model. American Epilepsy Society.

Neymotin SA, Uhlrich DJ, Lytton WW (2008). Virtual slice simulation of resonance in a layered cortical model. Society for Neuroscience. PDF

Neymotin SA, Olypher AV, Kao HY, Kelemen E, Jozwicka AE, Lytton WW, Fenton AA (2008). Standardized assessment of extracellular single unit isolation quality. Society for Neuroscience. PDF

2007

Lytton WW, Neymotin SA (2007). How understanding computers helps us think about the brain. Society for Neuroscience.