Safiulina et al 2010

1. 135 sections; 943 segments
2. 1 real cells
   1. root soma[0]
      1. 135 sections; 943 segments
      2. 14 distinct values of nseg
         1. Longest dx is 44.7271 at apical_dendrite[0] with nseg=1
         2. nseg not consistent under constant dx=50 assumption
         3. Greatest dlambda is 0.109785 at dendrite[7] with nseg=1
         4. nseg not consistent under constant dlambda=0.1 assumption
      3. 17 inserted mechanisms
         1. Ra
            1. 2 Ra
               1. axon[0].Ra = 50
               2. 134 Ra = 150
         2. cm = 1.41
         3. pas
            1. g_pas = 3.94166e-05
            2. e_pas = -64
         4. ena = 55
         5. ek = -90
         6. ca_ion
         7. gbar_KahpM95 = 0.003
         8. cacum
            1. 119 depth_cacum
               1. 119 or more distinct values
            2. tau_cacum = 100
            3. cai0_cacum = 5e-05
         9. gbar_cagk = 0.01
         10. cal
             1. gcalbar_cal = 0.003
             2. ggk_cal = 0
         11. gcanbar_can = 0.0003
         12. gcatbar_cat = 0.003
         13. hd
             1. ghdbar_hd = 0.0001
             2. vhalfl_hd = -73
         14. kap
             1. sh_kap = 6
             2. gkabar_kap = 0.008
         15. kdr
             1. gkdrbar_kdr = 0.003
             2. sh_kdr = 6
         16. km
             1. gbar_km = 0.0001
             2. sh_km = 6
         17. na3
             1. sh_na3 = 6
             2. gbar_na3 = 0.01
             3. ar_na3 = 1
      4. 7 subsets with constant parameters
         1. ModelViewParmSubset[1] (135 sections)
            1. cm = 1.41
            2. g_pas = 3.94166e-05
            3. e_pas = -64
            4. ena = 55
            5. ek = -90
            6. sh_kap = 6
            7. gkabar_kap = 0.008
            8. gkdrbar_kdr = 0.003
            9. sh_kdr = 6
            10. sh_na3 = 6
            11. gbar_na3 = 0.01
            12. ar_na3 = 1
         2. ModelViewParmSubset[2] (134 sections)
            1. Ra = 150
            2. gbar_KahpM95 = 0.003
            3. tau_cacum = 100
            4. cai0_cacum = 5e-05
            5. gbar_cagk = 0.01
            6. gcalbar_cal = 0.003
            7. ggk_cal = 0
            8. gcanbar_can = 0.0003
            9. gcatbar_cat = 0.003
            10. ghdbar_hd = 0.0001
            11. vhalfl_hd = -73
         3. ModelViewParmSubset[3] (1 sections)
         4. ModelViewParmSubset[4] (9 sections)
            1. depth_cacum = 0.2
         5. ModelViewParmSubset[5] (6 sections)
            1. depth_cacum = 0.3
         6. ModelViewParmSubset[6] (2 sections)
            1. depth_cacum = 0.45
         7. ModelViewParmSubset[7] (2 sections)
            1. depth_cacum = 0.65
      5. 116 sections with unique parameters
         1. axon[0] {
            1. Ra = 50
            2. }
         2. apical_dendrite[39] {
            1. depth_cacum = 0.156362
            2. }
         3. apical_dendrite[40] {
            1. depth_cacum = 0.156875
            2. }
         4. apical_dendrite[29] {
            1. depth_cacum = 0.169559
            2. }
         5. apical_dendrite[57] {
            1. depth_cacum = 0.170271
            2. }
         6. apical_dendrite[46] {
            1. depth_cacum = 0.194615
            2. }
         7. apical_dendrite[78] {
            1. depth_cacum = 0.196351
            2. }
         8. apical_dendrite[47] {
            1. depth_cacum = 0.199565
            2. }
         9. apical_dendrite[62] {
            1. depth_cacum = 0.203827
            2. }
         10. apical_dendrite[71] {
             1. depth_cacum = 0.20799
             2. }
         11. apical_dendrite[65] {
             1. depth_cacum = 0.208584
             2. }
         12. apical_dendrite[77] {
             1. depth_cacum = 0.208775
             2. }
         13. apical_dendrite[69] {
             1. depth_cacum = 0.210193
             2. }
         14. apical_dendrite[16] {
             1. depth_cacum = 0.210296
             2. }
         15. apical_dendrite[19] {
             1. depth_cacum = 0.211825
             2. }
         16. dendrite[14] {
             1. depth_cacum = 0.214238
             2. }
         17. apical_dendrite[48] {
             1. depth_cacum = 0.216169
             2. }
         18. apical_dendrite[33] {
             1. depth_cacum = 0.216252
             2. }
         19. apical_dendrite[75] {
             1. depth_cacum = 0.216336
             2. }
         20. apical_dendrite[13] {
             1. depth_cacum = 0.219472
             2. }
         21. apical_dendrite[73] {
             1. depth_cacum = 0.219755
             2. }
         22. apical_dendrite[80] {
             1. depth_cacum = 0.222724
             2. }
         23. apical_dendrite[54] {
             1. depth_cacum = 0.224863
             2. }
         24. apical_dendrite[34] {
             1. depth_cacum = 0.229494
             2. }
         25. apical_dendrite[37] {
             1. depth_cacum = 0.232961
             2. }
         26. apical_dendrite[49] {
             1. depth_cacum = 0.245579
             2. }
         27. apical_dendrite[22] {
             1. depth_cacum = 0.246603
             2. }
         28. dendrite[6] {
             1. depth_cacum = 0.25
             2. }
         29. apical_dendrite[58] {
             1. depth_cacum = 0.257256
             2. }
         30. apical_dendrite[42] {
             1. depth_cacum = 0.259174
             2. }
         31. apical_dendrite[38] {
             1. depth_cacum = 0.266123
             2. }
         32. dendrite[8] {
             1. depth_cacum = 0.27805
             2. }
         33. dendrite[46] {
             1. depth_cacum = 0.278447
             2. }
         34. dendrite[20] {
             1. depth_cacum = 0.279459
             2. }
         35. dendrite[38] {
             1. depth_cacum = 0.283939
             2. }
         36. dendrite[45] {
             1. depth_cacum = 0.284589
             2. }
         37. dendrite[4] {
             1. depth_cacum = 0.285627
             2. }
         38. apical_dendrite[5] {
             1. depth_cacum = 0.286504
             2. }
         39. dendrite[5] {
             1. depth_cacum = 0.287101
             2. }
         40. dendrite[30] {
             1. depth_cacum = 0.287671
             2. }
         41. dendrite[25] {
             1. depth_cacum = 0.288887
             2. }
         42. dendrite[37] {
             1. depth_cacum = 0.288993
             2. }
         43. apical_dendrite[27] {
             1. depth_cacum = 0.289034
             2. }
         44. dendrite[15] {
             1. depth_cacum = 0.289197
             2. }
         45. dendrite[27] {
             1. depth_cacum = 0.292282
             2. }
         46. apical_dendrite[28] {
             1. depth_cacum = 0.293167
             2. }
         47. dendrite[19] {
             1. depth_cacum = 0.293612
             2. }
         48. dendrite[3] {
             1. depth_cacum = 0.295386
             2. }
         49. dendrite[10] {
             1. depth_cacum = 0.296363
             2. }
         50. apical_dendrite[21] {
             1. depth_cacum = 0.296784
             2. }
         51. dendrite[51] {
             1. depth_cacum = 0.298366
             2. }
         52. apical_dendrite[20] {
             1. depth_cacum = 0.299707
             2. }
         53. dendrite[50] {
             1. depth_cacum = 0.301357
             2. }
         54. dendrite[47] {
             1. depth_cacum = 0.30167
             2. }
         55. dendrite[28] {
             1. depth_cacum = 0.302436
             2. }
         56. apical_dendrite[56] {
             1. depth_cacum = 0.303082
             2. }
         57. apical_dendrite[8] {
             1. depth_cacum = 0.303412
             2. }
         58. apical_dendrite[9] {
             1. depth_cacum = 0.304053
             2. }
         59. dendrite[35] {
             1. depth_cacum = 0.308544
             2. }
         60. apical_dendrite[31] {
             1. depth_cacum = 0.309738
             2. }
         61. apical_dendrite[36] {
             1. depth_cacum = 0.314053
             2. }
         62. dendrite[29] {
             1. depth_cacum = 0.314617
             2. }
         63. dendrite[41] {
             1. depth_cacum = 0.314962
             2. }
         64. dendrite[18] {
             1. depth_cacum = 0.319342
             2. }
         65. dendrite[17] {
             1. depth_cacum = 0.319694
             2. }
         66. apical_dendrite[61] {
             1. depth_cacum = 0.320043
             2. }
         67. apical_dendrite[45] {
             1. depth_cacum = 0.326371
             2. }
         68. apical_dendrite[4] {
             1. depth_cacum = 0.329198
             2. }
         69. dendrite[16] {
             1. depth_cacum = 0.35
             2. }
         70. dendrite[24] {
             1. depth_cacum = 0.358041
             2. }
         71. dendrite[2] {
             1. depth_cacum = 0.375
             2. }
         72. apical_dendrite[15] {
             1. depth_cacum = 0.381649
             2. }
         73. apical_dendrite[67] {
             1. depth_cacum = 0.384594
             2. }
         74. dendrite[34] {
             1. depth_cacum = 0.385853
             2. }
         75. apical_dendrite[32] {
             1. depth_cacum = 0.399187
             2. }
         76. dendrite[44] {
             1. depth_cacum = 0.4
             2. }
         77. dendrite[1] {
             1. depth_cacum = 0.402843
             2. }
         78. dendrite[26] {
             1. depth_cacum = 0.417265
             2. }
         79. dendrite[42] {
             1. depth_cacum = 0.41789
             2. }
         80. dendrite[43] {
             1. depth_cacum = 0.435663
             2. }
         81. apical_dendrite[52] {
             1. depth_cacum = 0.442021
             2. }
         82. dendrite[23] {
             1. depth_cacum = 0.442402
             2. }
         83. apical_dendrite[14] {
             1. depth_cacum = 0.466384
             2. }
         84. apical_dendrite[7] {
             1. depth_cacum = 0.468121
             2. }
         85. apical_dendrite[53] {
             1. depth_cacum = 0.474078
             2. }
         86. apical_dendrite[43] {
             1. depth_cacum = 0.481575
             2. }
         87. apical_dendrite[74] {
             1. depth_cacum = 0.522254
             2. }
         88. dendrite[36] {
             1. depth_cacum = 0.52963
             2. }
         89. apical_dendrite[72] {
             1. depth_cacum = 0.55
             2. }
         90. apical_dendrite[70] {
             1. depth_cacum = 0.569498
             2. }
         91. apical_dendrite[3] {
             1. depth_cacum = 0.569975
             2. }
         92. apical_dendrite[12] {
             1. depth_cacum = 0.611296
             2. }
         93. apical_dendrite[26] {
             1. depth_cacum = 0.614214
             2. }
         94. apical_dendrite[68] {
             1. depth_cacum = 0.635444
             2. }
         95. apical_dendrite[10] {
             1. depth_cacum = 0.658962
             2. }
         96. apical_dendrite[25] {
             1. depth_cacum = 0.683077
             2. }
         97. dendrite[48] {
             1. depth_cacum = 0.701461
             2. }
         98. apical_dendrite[41] {
             1. depth_cacum = 0.709766
             2. }
         99. apical_dendrite[35] {
             1. depth_cacum = 0.714817
             2. }
         100. dendrite[33] {
              1. depth_cacum = 0.75
              2. }
         101. dendrite[49] {
              1. depth_cacum = 0.825791
              2. }
         102. apical_dendrite[66] {
              1. depth_cacum = 0.835474
              2. }
         103. apical_dendrite[6] {
              1. depth_cacum = 0.868575
              2. }
         104. dendrite[40] {
              1. depth_cacum = 0.9
              2. }
         105. apical_dendrite[24] {
              1. depth_cacum = 0.944412
              2. }
         106. apical_dendrite[51] {
              1. depth_cacum = 1.24711
              2. }
         107. apical_dendrite[2] {
              1. depth_cacum = 1.46081
              2. }
         108. apical_dendrite[23] {
              1. depth_cacum = 1.91291
              2. }
         109. apical_dendrite[50] {
              1. depth_cacum = 1.91321
              2. }
         110. dendrite[32] {
              1. depth_cacum = 1.97071
              2. }
         111. dendrite[21] {
              1. depth_cacum = 2.45398
              2. }
         112. dendrite[39] {
              1. depth_cacum = 2.65768
              2. }
         113. dendrite[0] {
              1. depth_cacum = 2.86856
              2. }
         114. apical_dendrite[1] {
              1. depth_cacum = 2.95558
              2. }
         115. apical_dendrite[0] {
              1. depth_cacum = 4.50173
              2. }
         116. soma[0] {
              1. depth_cacum = 6.605
              2. gbar_km = 0.0001
              3. sh_km = 6
              4. }
      6. 61 Point Processes
         1. 60 Exp2Syn
            1. 2 tau1
               1. 30 tau1 = 0.4
               2. 30 tau1 = 1.4
            2. 2 tau2
               1. 30 tau2 = 4.8
               2. 30 tau2 = 27
            3. 2 e
               1. 30 e = -44
               2. 30 e = 0
         2. 1 APCount
            1. n = 0
            2. thresh = 0
            3. time = 0
3. 1 artificial cells of 1 base classes
   1. 1 NetStim
      1. interval = 50
      2. number = 10
      3. start = 20
      4. noise = 1
   2. Global parameters for Artificial Cells
4. 0 NetCon objects
5. 0 LinearMechanism objects
6. Density Mechanisms
   1. Mechanisms in use
      1. Ra
      2. capacitance
      3. pas
      4. na_ion
      5. k_ion
      6. ca_ion
      7. KahpM95
      8. cacum
      9. cagk
      10. cal
      11. can
      12. cat
      13. hd
      14. kap
      15. kdr
      16. km
      17. na3
   2. Homogeneous Parameters
      1. cm = 1.41
      2. g_pas = 3.94166e-05
      3. e_pas = -64
      4. ena = 55
      5. ek = -90
      6. gbar_KahpM95 = 0.003
      7. tau_cacum = 100
      8. cai0_cacum = 5e-05
      9. gbar_cagk = 0.01
      10. gcalbar_cal = 0.003
      11. ggk_cal = 0
      12. gcanbar_can = 0.0003
      13. gcatbar_cat = 0.003
      14. ghdbar_hd = 0.0001
      15. vhalfl_hd = -73
      16. sh_kap = 6
      17. gkabar_kap = 0.008
      18. gkdrbar_kdr = 0.003
      19. sh_kdr = 6
      20. gbar_km = 0.0001
      21. sh_km = 6
      22. sh_na3 = 6
      23. gbar_na3 = 0.01
      24. ar_na3 = 1
   3. Heterogeneous Parameters
      1. 2 Ra
         1. axon[0].Ra = 50
         2. 134 Ra = 150
      2. 119 depth_cacum
         1. 119 or more distinct values
   4. Global parameters for density mechanisms
      1. na_ion
         1. nai0_na_ion = 10
         2. nao0_na_ion = 140
      2. k_ion
         1. ki0_k_ion = 54.4
         2. ko0_k_ion = 2.5
      3. ca_ion
         1. cai0_ca_ion = 5e-05
         2. cao0_ca_ion = 2
      4. KahpM95
         1. n_KahpM95 = 4
         2. a0_KahpM95 = 1e+08
         3. b0_KahpM95 = 0.005
         4. q10_KahpM95 = 3
         5. inf_KahpM95 = 0
         6. tau_KahpM95 = 0
      5. cacum
         1. irest_cacum = 0
      6. cagk
         1. d1_cagk = 0.84
         2. d2_cagk = 1
         3. k1_cagk = 0.00048
         4. k2_cagk = 1.3e-07
         5. abar_cagk = 0.28
         6. bbar_cagk = 0.48
         7. st_cagk = 1
         8. oinf_cagk = 0
         9. tau_cagk = 0
      7. cal
         1. ki_cal = 0.001
         2. q10_cal = 5
         3. mmin_cal = 0.2
         4. tfa_cal = 1
         5. a0m_cal = 0.1
         6. zetam_cal = 2
         7. vhalfm_cal = 4
         8. gmm_cal = 0.1
         9. minf_cal = 0
         10. tau_cal = 0
      8. can
         1. ki_can = 0.001
         2. q10_can = 5
         3. mmin_can = 0.2
         4. hmin_can = 3
         5. a0m_can = 0.03
         6. zetam_can = 2
         7. vhalfm_can = -14
         8. gmm_can = 0.1
         9. minf_can = 0
         10. hinf_can = 0
         11. taum_can = 0
         12. tauh_can = 0
      9. cat
         1. q10_cat = 5
         2. mmin_cat = 0.2
         3. hmin_cat = 10
         4. a0h_cat = 0.015
         5. zetah_cat = 3.5
         6. vhalfh_cat = -75
         7. gmh_cat = 0.6
         8. a0m_cat = 0.04
         9. zetam_cat = 2
         10. vhalfm_cat = -28
         11. gmm_cat = 0.1
         12. hinf_cat = 0
         13. htau_cat = 0
         14. minf_cat = 0
         15. mtau_cat = 0
      10. hd
          1. ehd_hd = -30
          2. kl_hd = -8
          3. vhalft_hd = -75
          4. a0t_hd = 0.011
          5. zetat_hd = 2.2
          6. gmt_hd = 0.4
          7. q10_hd = 4.5
          8. qtl_hd = 1
          9. linf_hd = 0
          10. taul_hd = 0
      11. kap
          1. vhalfn_kap = 11
          2. vhalfl_kap = -56
          3. a0l_kap = 0.05
          4. a0n_kap = 0.05
          5. zetan_kap = -1.5
          6. zetal_kap = 3
          7. gmn_kap = 0.55
          8. gml_kap = 1
          9. lmin_kap = 2
          10. nmin_kap = 0.1
          11. pw_kap = -1
          12. tq_kap = -40
          13. qq_kap = 5
          14. q10_kap = 5
          15. qtl_kap = 1
          16. ninf_kap = 0
          17. linf_kap = 0
          18. taul_kap = 0
          19. taun_kap = 0
      12. kdr
          1. vhalfn_kdr = 13
          2. a0n_kdr = 0.02
          3. zetan_kdr = -3
          4. gmn_kdr = 0.7
          5. nmax_kdr = 2
          6. q10_kdr = 1
          7. ninf_kdr = 0
          8. taun_kdr = 0
      13. km
          1. vhalfl_km = -40
          2. kl_km = -10
          3. vhalft_km = -42
          4. a0t_km = 0.003
          5. zetat_km = 7
          6. gmt_km = 0.4
          7. q10_km = 5
          8. b0_km = 60
          9. st_km = 1
          10. inf_km = 0
          11. tau_km = 0
      14. na3
          1. tha_na3 = -30
          2. qa_na3 = 7.2
          3. Ra_na3 = 0.4
          4. Rb_na3 = 0.124
          5. thi1_na3 = -45
          6. thi2_na3 = -45
          7. qd_na3 = 1.5
          8. qg_na3 = 1.5
          9. mmin_na3 = 0.02
          10. hmin_na3 = 0.5
          11. q10_na3 = 2
          12. Rg_na3 = 0.01
          13. Rd_na3 = 0.03
          14. qq_na3 = 10
          15. tq_na3 = -55
          16. thinf_na3 = -50
          17. qinf_na3 = 4
          18. vhalfs_na3 = -60
          19. a0s_na3 = 0.0003
          20. zetas_na3 = 12
          21. gms_na3 = 0.2
          22. smax_na3 = 10
          23. vvh_na3 = -58
          24. vvs_na3 = 2
          25. minf_na3 = 0
          26. hinf_na3 = 0
          27. mtau_na3 = 0
          28. htau_na3 = 0
          29. sinf_na3 = 0
          30. taus_na3 = 0
   5. KSChan definitions for density mechanisms
7. 61 point processes (60 can receive events) of 2 base classes
   1. 61 Point Processes
      1. 60 Exp2Syn
         1. 2 tau1
            1. 30 tau1 = 0.4
            2. 30 tau1 = 1.4
         2. 2 tau2
            1. 30 tau2 = 4.8
            2. 30 tau2 = 27
         3. 2 e
            1. 30 e = -44
            2. 30 e = 0
      2. 1 APCount
         1. n = 0
         2. thresh = 0
         3. time = 0
   2. Global parameters for Point Processes
   3. KSChan definitions for Point Processes